PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG576800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 387aa    MW: 40644.3 Da    PI: 6.3439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG576800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-052753121254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Pavir.5KG576800.1.p 275 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 312
                          677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-11273327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-5273317No hitNo description
Gene3DG3DSA:4.10.280.101.0E-8277320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MADEWWSSTA HRSHGASACS AAPLAVVTDR VACGWATSPT AATAESTSSI TFQDPYRSST  60
HQPLSDAASS LGDPHADWTQ AFLSGRSDTG FQAVLQDDMV RAQPAGDEAS AMNNPLIGDM  120
SGGFLVDQAQ LAPPLPYGTA APPHQALFDG TAGHNISMYG DSQSTVSYDG PASMQFSQLL  180
KPSAPASGPM QGAAAAAMQY LSGSYLPFGG PLQSQLLLQA LQTKPSSRSS NANPLTDTVK  240
DACSPAARKS APESPAAAKR PRIEAPSPLP TFKVRKEKLG DRITALQQLV SPFGKTDTAS  300
VLHEAIEYIK FLHGQVSSLS SPYLKNGIPL QQHLQQKGSE DAKDSGDTKQ DLRSRGLCLV  360
PVASTYTVAA EAVPEFWHPT FGGTFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.154050.0leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698011e-152EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970206.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLK3XIS30.0K3XIS3_SETIT; Uncharacterized protein
STRINGSi001796m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-50bHLH family protein